backend.analysis.calculations
Line Column Type Object Message Symbol Message Id
Source 5 0 refactor force Too many arguments (7/5) too-many-arguments R0913
Source 20 0 refactor force_continuous Too many arguments (7/5) too-many-arguments R0913
Source 35 0 refactor dev_force Too many arguments (8/5) too-many-arguments R0913
backend.analysis.tissues
Line Column Type Object Message Symbol Message Id
Source 7 0 refactor Use 'from scipy import signal' instead consider-using-from-import R0402
Source 192 4 convention TissuePoints.continuous_df Missing function or method docstring missing-function-docstring C0116
backend.crud.crud_bio_reactor
Line Column Type Object Message Symbol Message Id
Source 13 0 error Unable to import 'models' import-error E0401
Source 14 0 error Unable to import 'schemas' import-error E0401
Source 41 0 convention get_bio_reactors_by_li_id Missing function or method docstring missing-function-docstring C0116
Source 65 0 refactor delete_bio_reactor Either all return statements in a function should return an expression, or none of them should. inconsistent-return-statements R1710
Source 83 0 convention check_bio_reactor_has_vids Missing function or method docstring missing-function-docstring C0116
Source 83 31 warning check_bio_reactor_has_vids Unused argument 'database_session' unused-argument W0613
Source 83 58 warning check_bio_reactor_has_vids Unused argument 'bio_id' unused-argument W0613
Source 94 0 warning get_bio_reactors_as_schema Dangerous default value [] as argument dangerous-default-value W0102
Source 94 0 convention get_bio_reactors_as_schema Missing function or method docstring missing-function-docstring C0116
backend.crud.crud_calibration_set
Line Column Type Object Message Symbol Message Id
Source 8 0 error Unable to import 'models' import-error E0401
Source 10 0 error Unable to import 'schemas' import-error E0401
Source 13 0 convention create Missing function or method docstring missing-function-docstring C0116
Source 17 7 convention create Use isinstance() rather than type() for a typecheck. unidiomatic-typecheck C0123
Source 26 0 convention delete Missing function or method docstring missing-function-docstring C0116
Source 43 0 convention get_calibration_sets Missing function or method docstring missing-function-docstring C0116
Source 47 0 convention get_calibration_set_by_identifier Missing function or method docstring missing-function-docstring C0116
Source 55 0 convention get_calibration_sets_by_li_identifier Missing function or method docstring missing-function-docstring C0116
Source 68 0 convention update_calibration_set Missing function or method docstring missing-function-docstring C0116
backend.crud.crud_experiment
Line Column Type Object Message Symbol Message Id
Source 12 0 error Unable to import 'models' import-error E0401
Source 13 0 error Unable to import 'schemas' import-error E0401
backend.crud.crud_post
Line Column Type Object Message Symbol Message Id
Source 7 0 error Unable to import 'models' import-error E0401
Source 8 0 error Unable to import 'schemas' import-error E0401
backend.crud.crud_tissue
Line Column Type Object Message Symbol Message Id
Source 7 0 error Unable to import 'models' import-error E0401
Source 8 0 error Unable to import 'schemas' import-error E0401
Source 10 0 error Unable to import 'crud' import-error E0401
backend.crud.crud_tissue_caculations
Line Column Type Object Message Symbol Message Id
Source 8 0 error Unable to import 'models' import-error E0401
backend.crud.crud_tissue_tracking
Line Column Type Object Message Symbol Message Id
Source 9 0 error Unable to import 'models' import-error E0401
Source 20 0 convention delete Missing function or method docstring missing-function-docstring C0116
Source 38 0 convention update_smooth_force Missing function or method docstring missing-function-docstring C0116
Source 48 0 convention update_raw_force Missing function or method docstring missing-function-docstring C0116
Source 58 0 convention update_smooth_disp Missing function or method docstring missing-function-docstring C0116
Source 67 0 convention update_forces_disp Missing function or method docstring missing-function-docstring C0116
backend.crud.crud_video
Line Column Type Object Message Symbol Message Id
Source 12 0 error Unable to import 'models' import-error E0401
Source 13 0 error Unable to import 'schemas' import-error E0401
Source 147 0 convention get_frequency_by_id Missing function or method docstring missing-function-docstring C0116
backend.main
Line Column Type Object Message Symbol Message Id
Source 13 0 error Unable to import 'models' import-error E0401
Source 14 0 error Unable to import 'log_config' import-error E0401
Source 15 0 error Unable to import 'database' import-error E0401
Source 16 0 error Unable to import 'routers' import-error E0401
backend.models
Line Column Type Object Message Symbol Message Id
Source 16 0 error Unable to import 'database' import-error E0401
Source 18 0 error Unable to import 'schemas' import-error E0401
Source 37 4 convention Experiment Attribute name "id" doesn't conform to snake_case naming style invalid-name C0103
Source 51 4 convention Video Attribute name "id" doesn't conform to snake_case naming style invalid-name C0103
Source 101 4 convention Tissue Attribute name "id" doesn't conform to snake_case naming style invalid-name C0103
Source 136 4 convention TissueTracking Attribute name "id" doesn't conform to snake_case naming style invalid-name C0103
Source 158 4 convention TissueCalculatedData Attribute name "id" doesn't conform to snake_case naming style invalid-name C0103
Source 198 4 convention BioReactor Attribute name "id" doesn't conform to snake_case naming style invalid-name C0103
Source 219 4 convention Post Attribute name "id" doesn't conform to snake_case naming style invalid-name C0103
Source 244 15 warning delete_empties Unused variable 'dirs' unused-variable W0612
Source 244 21 warning delete_empties Unused variable 'files' unused-variable W0612
backend.routers.router_analysis
Line Column Type Object Message Symbol Message Id
Source 46 9 warning TODO: Change this is js not here fixme W0511
Source 97 9 warning TODO: Change this is js not here fixme W0511
Source 154 5 warning TODO: add anaylized to tissue fixme W0511
Source 15 0 error Unable to import 'database' import-error E0401
Source 16 0 error Unable to import 'schemas' import-error E0401
Source 17 0 error Unable to import 'crud' import-error E0401
Source 18 0 error Unable to import 'analysis.tissues' import-error E0401
Source 20 0 error Unable to import 'models' import-error E0401
Source 65 0 convention analyze_tissue_number Missing function or method docstring missing-function-docstring C0116
Source 6 0 warning Unused import logging unused-import W0611
backend.routers.router_bio_reactor
Line Column Type Object Message Symbol Message Id
Source 99 0 convention Line too long (124/100) line-too-long C0301
Source 16 0 error Unable to import 'database' import-error E0401
Source 17 0 error Unable to import 'crud' import-error E0401
Source 18 0 error Unable to import 'schemas' import-error E0401
Source 20 0 error Unable to import 'models' import-error E0401
Source 94 0 convention dowload_bio_reactor_archive Missing function or method docstring missing-function-docstring C0116
Source 102 9 warning dowload_bio_reactor_archive Using open without explicitly specifying an encoding unspecified-encoding W1514
Source 7 0 warning Unused asdict imported from dataclasses unused-import W0611
backend.routers.router_calibration_set
Line Column Type Object Message Symbol Message Id
Source 7 0 error Unable to import 'database' import-error E0401
Source 9 0 error Unable to import 'crud' import-error E0401
Source 10 0 error Unable to import 'schemas' import-error E0401
backend.routers.router_experiment
Line Column Type Object Message Symbol Message Id
Source 17 0 error Unable to import 'database' import-error E0401
Source 18 0 error Unable to import 'crud' import-error E0401
Source 24 0 error Unable to import 'schemas' import-error E0401
Source 25 0 error Unable to import 'models' import-error E0401
Source 79 4 refactor add_experiment Unnecessary "elif" after "raise" no-else-raise R1720
Source 105 13 warning _tissue_tracking_to_csv Using open without explicitly specifying an encoding unspecified-encoding W1514
Source 117 0 refactor json_experiment Too many local variables (16/15) too-many-locals R0914
Source 148 8 convention json_experiment Variable name "x" doesn't conform to snake_case naming style invalid-name C0103
Source 172 9 warning json_experiment Using open without explicitly specifying an encoding unspecified-encoding W1514
Source 8 0 warning Unused import logging unused-import W0611
Source 24 0 warning Unused schema_bio_reactor imported from schemas unused-import W0611
backend.routers.router_tissue
Line Column Type Object Message Symbol Message Id
Source 7 0 error Unable to import 'database' import-error E0401
Source 8 0 error Unable to import 'crud' import-error E0401
Source 8 0 warning Unused crud_experiment imported from crud unused-import W0611
backend.routers.router_tracking
Line Column Type Object Message Symbol Message Id
Source 9 0 error Unable to import 'database' import-error E0401
Source 10 0 error Unable to import 'crud' import-error E0401
Source 11 0 error Unable to import 'schemas' import-error E0401
Source 13 0 error Unable to import 'trackings.trackers' import-error E0401
backend.routers.router_upload
Line Column Type Object Message Symbol Message Id
Source 20 0 error Unable to import 'models' import-error E0401
Source 21 0 error Unable to import 'database' import-error E0401
Source 22 0 error Unable to import 'crud' import-error E0401
Source 32 0 error Unable to import 'schemas' import-error E0401
Source 290 9 warning _bio_reactor_archive_unpack Using open without explicitly specifying an encoding unspecified-encoding W1514
Source 305 9 warning _experiment_file_unpack Using open without explicitly specifying an encoding unspecified-encoding W1514
backend.routers.router_video
Line Column Type Object Message Symbol Message Id
Source 42 5 warning TODO: make sure image is horizonal fixme W0511
Source 17 0 error Unable to import 'database' import-error E0401
Source 18 0 error Unable to import 'crud' import-error E0401
Source 19 0 error Unable to import 'schemas' import-error E0401
backend.schemas.schema_analysis
Line Column Type Object Message Symbol Message Id
Source 27 4 convention AnalysisBase.Config Missing class docstring missing-class-docstring C0115
Source 27 4 refactor AnalysisBase.Config Too few public methods (0/2) too-few-public-methods R0903
backend.schemas.schema_bio_reactor
Line Column Type Object Message Symbol Message Id
Source 14 0 convention BioReactorBase Missing class docstring missing-class-docstring C0115
Source 21 4 convention BioReactorBase.Config Missing class docstring missing-class-docstring C0115
Source 21 4 refactor BioReactorBase.Config Too few public methods (0/2) too-few-public-methods R0903
Source 25 0 convention BioReactorCreate Missing class docstring missing-class-docstring C0115
Source 29 0 convention BioReactor Missing class docstring missing-class-docstring C0115
Source 34 0 convention BioReactorWithPosts Missing class docstring missing-class-docstring C0115
Source 39 0 convention BioReactorArchive Missing class docstring missing-class-docstring C0115
Source 9 0 convention standard import "from typing import Optional" should be placed before "from pydantic import BaseModel" wrong-import-order C0411
Source 9 0 convention Imports from package typing are not grouped ungrouped-imports C0412
backend.schemas.schema_calibration_set
Line Column Type Object Message Symbol Message Id
Source 5 0 convention CalibrationSet Missing class docstring missing-class-docstring C0115
Source 9 4 convention CalibrationSet.Config Missing class docstring missing-class-docstring C0115
Source 9 4 refactor CalibrationSet.Config Too few public methods (0/2) too-few-public-methods R0903
backend.schemas.schema_experiment
Line Column Type Object Message Symbol Message Id
Source 2 0 error Unable to import 'schemas' import-error E0401
Source 11 0 convention ExperimentBase Missing class docstring missing-class-docstring C0115
Source 15 4 convention ExperimentBase.Config Missing class docstring missing-class-docstring C0115
Source 15 4 refactor ExperimentBase.Config Too few public methods (0/2) too-few-public-methods R0903
Source 19 0 convention Experiment Missing class docstring missing-class-docstring C0115
Source 24 0 convention ExperimentWithVids Missing class docstring missing-class-docstring C0115
Source 29 0 convention ExperimentDownload Missing class docstring missing-class-docstring C0115
Source 3 0 convention standard import "from typing import List, Optional" should be placed before "from schemas import schema_calibration_set" wrong-import-order C0411
Source 4 0 convention standard import "from datetime import date" should be placed before "from schemas import schema_calibration_set" wrong-import-order C0411
backend.schemas.schema_post
Line Column Type Object Message Symbol Message Id
Source 1 0 convention Missing module docstring missing-module-docstring C0114
Source 4 0 convention PostBase Missing class docstring missing-class-docstring C0115
Source 7 4 convention PostBase.Config Missing class docstring missing-class-docstring C0115
Source 7 4 refactor PostBase.Config Too few public methods (0/2) too-few-public-methods R0903
Source 11 0 convention PostCreate Missing class docstring missing-class-docstring C0115
Source 19 0 convention Post Missing class docstring missing-class-docstring C0115
Source 24 0 convention PostWithHeights Missing class docstring missing-class-docstring C0115
backend.schemas.schema_tissue
Line Column Type Object Message Symbol Message Id
Source 9 0 convention TissueBase Missing class docstring missing-class-docstring C0115
Source 14 4 convention TissueBase.Config Missing class docstring missing-class-docstring C0115
Source 14 4 refactor TissueBase.Config Too few public methods (0/2) too-few-public-methods R0903
Source 18 0 convention TissueCreate Missing class docstring missing-class-docstring C0115
Source 22 0 convention Tissue Missing class docstring missing-class-docstring C0115
backend.schemas.schema_video
Line Column Type Object Message Symbol Message Id
Source 10 0 convention VideoBase Missing class docstring missing-class-docstring C0115
Source 14 4 convention VideoBase.Config Missing class docstring missing-class-docstring C0115
Source 14 4 refactor VideoBase.Config Too few public methods (0/2) too-few-public-methods R0903
Source 18 0 convention VideoCreate Missing class docstring missing-class-docstring C0115
Source 29 0 convention VideoInfo Missing class docstring missing-class-docstring C0115
Source 35 0 convention Video Missing class docstring missing-class-docstring C0115
Source 44 0 convention VideoShow Missing class docstring missing-class-docstring C0115
Source 55 0 convention PostSelection Missing class docstring missing-class-docstring C0115
Source 7 0 warning Unused import schema_calibration_set unused-import W0611
de6fff7ff1bb_first_commit
Line Column Type Object Message Symbol Message Id
Source 4 8 convention Trailing whitespace trailing-whitespace C0303
Source 13 0 convention Constant name "revision" doesn't conform to UPPER_CASE naming style invalid-name C0103
Source 14 0 convention Constant name "down_revision" doesn't conform to UPPER_CASE naming style invalid-name C0103
Source 15 0 convention Constant name "branch_labels" doesn't conform to UPPER_CASE naming style invalid-name C0103
Source 16 0 convention Constant name "depends_on" doesn't conform to UPPER_CASE naming style invalid-name C0103
Source 19 0 convention upgrade Missing function or method docstring missing-function-docstring C0116
Source 25 0 convention downgrade Missing function or method docstring missing-function-docstring C0116
Source 8 0 warning Unused op imported from alembic unused-import W0611
Source 9 0 warning Unused sqlalchemy imported as sa unused-import W0611
env
Line Column Type Object Message Symbol Message Id
Source 9 0 error Unable to import 'models' import-error E0401
Source 10 0 error Unable to import 'database' import-error E0401
Source 14 9 error Module 'alembic.context' has no 'config' member no-member E1101
Source 50 8 error run_migrations_online Module 'alembic.context' has no 'configure' member no-member E1101
Source 52 13 error run_migrations_online Module 'alembic.context' has no 'begin_transaction' member no-member E1101
Source 53 12 error run_migrations_online Module 'alembic.context' has no 'run_migrations' member no-member E1101
tests.conftest
Line Column Type Object Message Symbol Message Id
Source 16 0 refactor TissTemp Too few public methods (0/2) too-few-public-methods R0903
Source 23 0 refactor PostTemp Too few public methods (0/2) too-few-public-methods R0903
tests.test_calculations
Line Column Type Object Message Symbol Message Id
Source 12 5 warning TODO: Might need to half or double since calculation is per post. fixme W0511
tests.test_tissue_class
Line Column Type Object Message Symbol Message Id
Source 58 1 warning TODO: Test fringe conditions for basepoints and frontpoints fixme W0511
trackers
Line Column Type Object Message Symbol Message Id
Source 11 0 error Unable to import 'crud' import-error E0401
Source 19 4 refactor TissueTracker.__init__ Too many local variables (17/15) too-many-locals R0914